Lists (15)
Stars
Repository to host tool-specific module files for the Nextflow DSL2 community!
A curated collection of Nextflow implementation patterns
A fully reproducible and state-of-the-art ancient DNA analysis pipeline
The Polygenic Score Catalog Calculator is a nextflow pipeline for polygenic score calculation
Call and score variants from WGS/WES of rare disease patients.
Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq
A nextflow pipeline to perform state-of-the-art genome-wide association studies.
(WIP) best-practices workflow for rare disease
Imputation Server 2 workflow to facilitate genotype imputation at scale.
Nextflow basic tutorial for newbie users
Whole Exome/Whole Genome Sequencing alignment pipeline
UNDER CONSTRUCTION: A pipeline for Genome Wide Association Studies
A bioinformatics pipeline to phase and impute genetic data
A bioinformatics best-practice analysis pipeline for calling structural variants (SVs), copy number variants (CNVs) and repeat region expansions (RREs) from short DNA reads
mtDNA-Server 2: A web-service and Nextflow pipeline for mitochondrial genomes
Nextflow Alignment Pipeline - from fastq.gz to sorted bam with ease
Nextflow workshop 2018 -- Training pages -> https://nextflow-io.github.io/nf-hack18/
Flexible linear mixed model framework for Genome Wide Association Studies
Chromatin ACcessibility and Transcriptomics Unifying Software
GWAS and rare variants tests at high speed using regenie
A bioinformatics best-practice analysis pipeline for the analysis of shallow whole genome sequencing (sWGS) data for the identification of copy number alterations (CNAs).
Bioinformatics pipeline that makes use of expression and open chromatin data to identify differentially active transcription factors across conditions.
A nextflow pipeline which integrates multiple omic data streams and performs coordinated analysis
Scalable Nextflow implementation of germline alignment and short variant calling with Parabricks for NCI Gadi HPC.