Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)

MSigDB gene sets for multiple organisms in a tidy data format

Lightweight Iterative Gene set Enrichment in R

Evolutionary Transcriptomics with R

A differential and enrichment analyses pipeline for bulk ATAC-seq (and RNA-seq)

Package to calculate functional similarity between genes https://biocor.llrs.dev

An r interface to perform ROMA

💹 The package is user friendly interface based on the cgdsr and other modeling packages to explore, compare, and analyse all available Cancer Data (Clinical data, Gene Mutation, Gene Methylation, Gene Expression, Protein Phosphorylation, Copy Number Alteration) hosted by the Computational Biology Center at Memorial-Sloan-Kettering Cancer Center …

🧬 Toolkit for Evaluating Gene Sets as Phenotype Markers in R

R wrapper for ermineJ

Package to analyse gene sets

Gene Set Enrichment Class Analysis for heterogeneous RNA sequencing data

An R package containing tools to prepare, analyze, and visualize named lists of sets, with an emphasis on molecular signatures (such as gene sets).

Ready-to-use curated genesets for cinaR

Fast Single-Sample Gene Set Enrichment Analysis (ssGSEA) and Post-Translational Modification Signature Enrichment Analysis (PTM-SEA).

Code and resources related to the olfactory regeneration project

Experimental version of data package associated with chipenrich

Gene sets and functions for working with them.

Enables Gene Ontology (and other feature annotation) enrichment calculations and comparisons between feature sets.

muleaData is an ExperimentHubData Bioconductor package for the mulea R package