DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
DNABERT: pre-trained Bidirectional Encoder Representations from Transformers model for DNA-language in genome
Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs
Nanopore sequence read simulator
A Python library for Gene–environment interaction analysis via deep learning
viral-ngs: command line tools and wrappers for processing raw viral genomic data
Pure-python implementation of UCSC liftOver genome coordinate conversion
A package for designing compact and comprehensive capture probe sets.
C-Phasing/CPhasing: Phasing and scaffolding polyploid genomes based on 3C-based data (Pore-C, CiFi, Hi-C，Omni-C).
A genome diagram generator for microbes and organelles
Genetic learning algorithm implementation for simulations, games, or general machine learning problems
A tool for simulating random mutations in any genome
Efficiently keep track of changes to genomes
A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing (WGBS) data.
Understand DNA structure and how machine learning can be used to work with DNA sequence data.
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