🔬 Assemble large genomes using short reads

Genome annotation with AUGUSTUS

Sensitive alignment of genomes with high sequence diversity, extensive structural polymorphism and whole-genome duplication variation

A fast 23andMe DNA parser and inferrer for Python

🌈Scaffold genome sequence assemblies using linked or long read sequencing data

memory efficient, fast & precise taxnomomic classification system for metagenomic read mapping

📚Bioinformatics Technology Lab common code library

Fast Bayesian Hidden Markov Model with Wavelet Compression

Parallel String Graph Construction, Transitive Reduction, and Contig Generation for De Novo Genome Assembly

A comprehensive telomere annotation tool for genome assemblies and graphs.

Create genome graph structures via RLZ compression.

Jointly characterizing epigenetic dynamics across multiple cell types

Software for Rapid Analyses of Human Copy Number Data

High performance tools for analyzing coronavirus genome

SIGA is a de novo genome assembler compatible with the SGA file format

🌿🫐 Bramble: project spliced genomic alignments into transcriptomic space

HiSIF: Genome-wide chromatin interactions identify characteristic promoter-distal loops

Letter set generator and sequencer read simulator

Comparing 3' single-end sequencing for genome and txome

soft2hard masking