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8 stars written in Java
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Accurate Species TRee ALgorithm

Java 266 68 Updated Apr 1, 2024

A module for improving the insertion sequences of structural variant calls

Java 32 6 Updated Jul 14, 2021
Java 19 5 Updated May 27, 2025

browse genomics data for multiple reference sequences simultaneously

Java 8 Updated Nov 14, 2016

Software for comparing two (very large) alignments efficiently

Java 8 1 Updated Aug 11, 2021

Accurate Species TRee ALgorithm IV (Warning: a bleeding edge version)

Java 6 Updated Jun 23, 2020

Constrained Non-Exonic Predictor (CNEP) provides a score of evidence that each base of the genome in a constrained non-exonic base from information within large-scale collections of epigenomic and …

Java 3 1 Updated Jun 13, 2022

Bayesian Evolutionary Analysis Sampling Trees

Java 1 1 Updated Nov 15, 2016