Stars
Unix, R and python tools for genomics and data science
A One-Click System for Analyzing Loop-Resolution Hi-C Experiments
By study this, it won't be costly or time-consuming to customize a NGS data analysis pipeline
VGP repository for the genome assembly working group
Evaluation and polishing workflows for T2T genome assemblies
MitoZ: A toolkit for assembly, annotation, and visualization of animal mitochondrial genomes
Workflow for Building Microsynteny Networks
genEra is a fast and easy-to-use command-line tool that estimates the age of the last common ancestor of protein-coding gene families.
Repository of common bioinformatics scripts
Scripts of population genomics analysis
This repository provides source code for several pipelines dedicated to the alignment of nucleotide coding sequences that are based on MACSE. These pipelines are mostly bash scripts encapsulated wi…
Mostly deprecated. See https://github.com/PacificBiosciences/FALCON_unzip/wiki/Binaries
Pipelines to create and analyze ENCODE candidate cis-Regulatory Elements
methods for orphan gene prediction paper optimization
A comprehensive pipeline for RNAseq data analysis
Accompanying repository for our publications on manual curation methods for Transposable Elements.
Assemble and following pipeline used in wisent genome paper.
Code used to analyse WGS data of giraffe in Coimbra et al. 2021
Chromosome conformation capture resolved near complete genome assembly of broomcorn millet