A genetic sequence analysis on calculating the GC contents and CpG deficiencies on multiple coronaviruses (SAR-CoV, SAR-CoV-2, MERS-CoV and 2 two bat derived SARS-like coronaviruses) to see which coronavirus has the most potentially effective mechanism to escape the anti-virus activities on human bodies.
In this training course you will find theory and practice material for introducing yourself to wgs analysis for bacterial, including outbreak investigation.
Research projects conducted at the GeneMAP Research Center
This is Loan Robinson Github Page, which includes all tutorials for education purpose.
A tool for deep statistical analyses and informative visualizations of complex -omic data
Example files for Benin NGS capacity building project
Webserver for storage [and analysis] of NGS-based HIVDR testing data
Análisis genómicos y transcriptómicos con plataforma NGS
A python package storing different tools for different NGS operations
🧐Handbook for NGS data analysis
This project focuses on identifying somatic variants in whole-genome sequencing (WGS) data from tongue cancer samples and cell lines. The workflow leverages industry-standard tools for alignment, quality control, and variant calling, specifically targeting chromosomes 6 and 7 of the human genome.
Galaxy YEP Qc & Viz workflow invocation scripts and input datasets
🐳 Galaxy Docker repository for NGS Analysis
workflow and notes on large virus genome assembly and snp call using FastQC, Trimmomatic, bowtie2, and samtools.
deepEA: a containerized web server for interactive analysis of epitranscriptome sequencing data
A Hugo-based deployment of biocomputeobject.org
Quality control and processing of NGS data
Whole-Genome-Sequencing analysis pipeline of Ascochyta rabiei isolates
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