Workshop • Intro to Bioinformatics using NGS data • 5 days

Research projects conducted at the GeneMAP Research Center

SEAL db - Simple, Efficient And Lite database for NGS

This project focuses on identifying somatic variants in whole-genome sequencing (WGS) data from tongue cancer samples and cell lines. The workflow leverages industry-standard tools for alignment, quality control, and variant calling, specifically targeting chromosomes 6 and 7 of the human genome.

R package: Simulate Expression data from igraph network using mvtnorm (CRAN; JOSS)

Análisis genómicos y transcriptómicos con plataforma NGS

NGS Data Processing Pipeline

🧐Handbook for NGS data analysis

In this training course you will find theory and practice material for introducing yourself to wgs analysis for bacterial, including outbreak investigation.

Webserver for storage [and analysis] of NGS-based HIVDR testing data

This is Loan Robinson Github Page, which includes all tutorials for education purpose.

Fast-polyvalent trimmer used for several applications of next-generation sequencing

Whole-Genome-Sequencing analysis pipeline of Ascochyta rabiei isolates

A tool for deep statistical analyses and informative visualizations of complex -omic data

workflow and notes on large virus genome assembly and snp call using FastQC, Trimmomatic, bowtie2, and samtools.

Teaching material used in the "Advanced Bioinformatics for Next-Generation Sequencing" class, University of Copenhagen, 2021

Quality control and processing of NGS data

A python package storing different tools for different NGS operations

A Hugo-based deployment of biocomputeobject.org