RNA-seq pipeline in R/Bash enables QC, alignment, read counting, and differential expression using Bioconductor; reproducible workflow on Ubuntu with Conda. 🐙

Bulk-RNA seq workflow

Materials for ACE course on Genetic Linkage Analysis.

A flexible, automation and pragmatic workflow tool to process the NGS data.

Bioinformatics analysis pipeline for metagenomic profiling, functional annotation, and machine learning on T2D patient data.

The KlebGen project is a genomics surveillance initiative focused on Klebsiella Pneumoniae and E. Coli strains isolated from neonates across Africa. This repository contains all the scripts used to analyze the strains from the Cameroonian subset of the project.

R package MiscMetabar: Miscellaneous functions for metabarcoding analysis

This RNAseq data analysis tutorial is created for educational purpose

This project was my Master's (Biotechnology) Thesis project where we aimed to develop a machine learning model that identifies Oral cancer candidate genes.

Shiny app for the visualization of SARS-CoV-2 epigenetic data. This application presents Cameroon’s SARS-CoV-2 response through laboratory diagnosis and sequencing.

Aggregation of QC metrics and outlier nomination for multi-sample studies

A repository for efficient population genomic analysis using Snakemake workflow.

Tumor in normal detection

Analysis of Single-Cell RNA data from SRR14294834 in peripheral blood mononuclear cells in severe asthma

process and analyze paired-end ATAC-Seq data

A reproducible RNA-Seq analysis pipeline for Staphylococcus aureus under antibiotic stress, utilizing Nextflow and Singularity. It involves genome mapping, read counting, and statistical analysis to identify differentially expressed genes (DEGs) and generates key visualizations.

Here is my participation to the 2024 edition of the HackBio Internship (AMR in cancer track).

Here is my participation to the 2024 edition of the HackBio Internship (AMR in cancer track).

An assessment of the species diversity and disease potential of Pythium communities in Europe

An R package for RNAseq differential expression analysis and visualization, in an easy and reproducible way.