An assessment of the species diversity and disease potential of Pythium communities in Europe

Here is my participation to the 2024 edition of the HackBio Internship (AMR in cancer track).

SRSF shape analysis framework for sequencing data

This tool is aimed at helping to analyze small to medium vcf files of genotyped individuals.

Source code to support the paper: “Extensive tissue-specific expression variation and novel regulators underlying circadian behavior”

This project was my Master's (Biotechnology) Thesis project where we aimed to develop a machine learning model that identifies Oral cancer candidate genes.

A repository for efficient population genomic analysis using Snakemake workflow.

A reproducible RNA-Seq analysis pipeline for Staphylococcus aureus under antibiotic stress, utilizing Nextflow and Singularity. It involves genome mapping, read counting, and statistical analysis to identify differentially expressed genes (DEGs) and generates key visualizations.

Useful R-scripts by edert

Code and scripts used for Worth et al. 2022: "Receptor editing constrains development of phosphatidyl choline-specific B cells in VH12-transgenic mice".

main Repository for my Master's Thesis work

Analysis of Single-Cell RNA data from SRR14294834 in peripheral blood mononuclear cells in severe asthma

RNA-seq analysis

R package for Sequence Search in BAM files using R Bioconductor

RNA-seq analysis workflow using DESeq2

ChIP-seq

R Package for interrogating clonal data

Repository containing various RNA-seq, ChIP-seq, and 16S-seq analysis pipelines run through R

Collection of Scripts used for Population Genetic Study of RNAi Genes Duplications in Drosophila

Aggregation of QC metrics and outlier nomination for multi-sample studies