miscellaneous stand-alone basic utilities for genomics and genomics-adjacent operations (share with lab mates)
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Sep 11, 2025 - Python
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ngs-analysis
Here are 76 public repositories matching this topic...
Pipeline para montagem direcionada (gene-a-gene) a partir de leituras pareadas.
python-script bioinformatics-pipeline viral-genomics ngs-analysis laboratory-reports arboviruses genomics-analysis public-health-surveillance bacterial-genomics genome-assembly-utilities
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Aug 6, 2025 - Python
This repository covers research paper implementations in the field of Genomics, Next Generation Sequencing, Bioinformatics and Machine Learning.
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Sep 1, 2022 - Python
This project plots the effect of selecting different kmer length parameter in 2 different de novo genome assembly tools - AbySS and Velvet.
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Aug 3, 2024 - Python
Coverage graph creator from BAM files (included in the SSV-Conta package)
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Feb 7, 2020 - Python
Coverage graph creator from BAM files (included in the SSV-Conta package)
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Jun 14, 2018 - Python
Python scripts for design of 5'/3' RACE-based NGS panels, and the following data analysis
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Sep 16, 2024 - Python
Bioinformatics is a field of information technology and biological science, which use to managing, storing and analyzing these biological data such as DNA, RNA and protein, In this repository I'm use python to create various types of program for analyzing biological data
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Jun 8, 2023 - Python
Metrics App is a bioinformatics application developed in Python and Streamlit for calculate Depth of Coverage and Breadth of Coverage from BAM/CRAM files.
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Dec 12, 2024 - Python
Professional MCP server for FastQC and MultiQC quality control analysis with advanced visualization and report parsing
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Dec 6, 2025 - Python
CRISPRSeqSim is a tool that simulates results of CRISPR/cas editing fragments target sequencing.
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Jul 10, 2023 - Python
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Aug 8, 2022 - Python
A tool to calculate the equipolar amounts of two amplicons for upcoming sequencing with NGS
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May 17, 2022 - Python
Clinical Prediction tool with inbuild machine learning model
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Nov 2, 2025 - Python
Files pertaining to the processing of NGS data in .fasta.gz format for the purposes of identifying the genomic sequences which belong to either of the tuataras dual mitochondrial genomes.
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Apr 2, 2025 - Python
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Mar 17, 2018 - Python
Custom scripts and workflows used in the genomics and population analysis of oat crown rust (Puccinia coronata f. sp. avenae) preprint (bioRxiv 2023.09.18.557855). All steps performed in Linux environment or R.
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Sep 21, 2023 - Python
various tools that help with deep sequencing analysis
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Oct 26, 2023 - Python
Snakemake pipeline to merge gnomAD VCF files
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Jun 21, 2019 - Python
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