WisecondorX — An evolved WISECONDOR

is an open-source LIMS (laboratory Information Management System) for Next Generation Sequencing sample management, statistics and reports, and bioinformatics analysis service management.

Genomic interval operations on Pandas DataFrames

HemTools: a collection of NGS pipelines and bioinformatic analyses

Publication quality NGS track plotting

群体遗传学分析中用到的script和skill等

Project Manager for NGS data analysis

Flexible analysis of high-content CRISPR screening

RNA-seq pipeline for raw sequence alignment and transcript/gene quantification.

A toolkit for NGS analysis with Python

A tool to archive and co-locate NGS data with project-level, sample-level, and analysis-specific metadata.

Circrnas in Host And viRuses anaLysis pIpEline for Detection Annotation Quantification of circRNAs

The ChIP-Seq peak calling algorithm using convolution neural networks

NGS data analysis scripts for HBV elimination research group

Mobile Element Insertion Breakpoint Analyzer (MEIBA)

Multisample DNAseq variant calling pipeline for use in diagnostics

TransfoRNA: Navigating the Uncertainties of Small RNA Annotation with an Adaptive Machine Learning Strategy

Tools for analyzing NGS sequence data and aligned protein sequences

ViroConstrictor is a pipeline designed to process raw FastQ data from viral amplicon-based sequencing and generate biologically correct consensus sequences of the given viral genome

duplex DNA molecule identification tool for ultra-sensitive SNV detection