Computational Suite for Bioinformaticians and Biologists (CSBB) is a RShiny application developed with an intention to empower researchers from wet and dry lab to perform downstream Bioinformatics analysis

This RNAseq data analysis tutorial is created for educational purpose

A comprehensive R package to construct interactive and reproducible biological data analysis applications based on the R platform

Ensemble Learning for Harmonization and Annotation of Single Cells (ELeFHAnt) provides an easy to use R package for users to annotate clusters of single cells, harmonize labels across single cell datasets to generate a unified atlas and infer relationship among celltypes between two datasets. It uses an ensemble of three machine learning classif…

Multple methods for BSA Pipeline

A flexible, automation and pragmatic workflow tool to process the NGS data.

Algorithm to implement Fraction and Allelic Copy number Estimate from Tumor/normal Sequencing using unmatched normal sample(s) for log ratio calculations

Materials for ACE course on Genetic Linkage Analysis.

SRSF shape analysis framework for sequencing data

An R package for RNAseq differential expression analysis and visualization, in an easy and reproducible way.

An R package to integrate and analyze CNV calling results from multiple methods in a uniformed and standardized manner

process and analyze paired-end ATAC-Seq data

🧽 Estimate sequencing saturation for GEX, VDJ, and ADT data from the 10x Genomics platform.

Hunting for CMV and HHV-6 in cfDNA sequence

R package for Sequence Search in BAM files using R Bioconductor

Tumor in normal detection

A QC pipeline for SVs calls based on coverage and SNP calls

Aggregation of QC metrics and outlier nomination for multi-sample studies

An assessment of the species diversity and disease potential of Pythium communities in Europe

Here is my participation to the 2024 edition of the HackBio Internship (AMR in cancer track).