A comprehensive R package to construct interactive and reproducible biological data analysis applications based on the R platform
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Jan 8, 2023 - R
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ngs-analysis
Here are 48 public repositories matching this topic...
Computational Suite for Bioinformaticians and Biologists (CSBB) is a RShiny application developed with an intention to empower researchers from wet and dry lab to perform downstream Bioinformatics analysis
ngs data-visualization rshiny data-analysis single-cell data-normalization analysis-framework ngs-analysis single-cell-rna-seq ngs-pipeline rshiny-application
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Apr 5, 2023 - R
This RNAseq data analysis tutorial is created for educational purpose
tutorial rna-seq r analysis ngs gene-expression pca-analysis rnaseq deseq2 bioconductor-packages enrichment-analysis edger ngs-analysis rnaseq-workshop reactome-pathway rnaseq-pipeline rna-seq-dge
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Sep 30, 2025 - R
Ensemble Learning for Harmonization and Annotation of Single Cells (ELeFHAnt) provides an easy to use R package for users to annotate clusters of single cells, harmonize labels across single cell datasets to generate a unified atlas and infer relationship among celltypes between two datasets. It uses an ensemble of three machine learning classif…
machine-learning scalability classification single-cell annotation-tool harmonization ngs-analysis single-cell-rna-seq cell-biology celltype-annotation
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Jul 18, 2022 - R
R package MiscMetabar: Miscellaneous functions for metabarcoding analysis
visualization package r r-package biodiversity-informatics ecology illumina metabarcoding amplicon ngs-analysis amplicon-sequencing
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Nov 27, 2025 - R
Algorithm to implement Fraction and Allelic Copy number Estimate from Tumor/normal Sequencing using unmatched normal sample(s) for log ratio calculations
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Sep 15, 2023 - R
A flexible, automation and pragmatic workflow tool to process the NGS data.
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Dec 1, 2025 - R
Multple methods for BSA Pipeline
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Dec 22, 2019 - R
Algorithm to implement Fraction and Allelic Copy number Estimate from Tumor/normal Sequencing using unmatched normal sample(s) for log ratio calculations
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May 6, 2022 - R
An R package for RNAseq differential expression analysis and visualization, in an easy and reproducible way.
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Aug 24, 2024 - R
A QC pipeline for SVs calls based on coverage and SNP calls
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Aug 15, 2018 - R
🧽 Estimate sequencing saturation for GEX, VDJ, and ADT data from the 10x Genomics platform.
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Apr 13, 2023 - R
R/Bioconductor package for e/iCLIP data analysis
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Mar 13, 2024 - R
Tumor in normal detection
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Mar 25, 2025 - R
process and analyze paired-end ATAC-Seq data
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Dec 18, 2024 - R
Source code to support the paper: "Extensive mitochondrial population structure and haplotype-specific variation in metabolic phenotypes in the Drosophila Genetic Reference Panel"
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Sep 9, 2022 - R
Here is my participation to the 2024 edition of the HackBio Internship (AMR in cancer track).
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Oct 5, 2024 - R
RNA-seq pipeline in R/Bash enables QC, alignment, read counting, and differential expression using Bioconductor; reproducible workflow on Ubuntu with Conda. 🐙
snakemake pipeline genomics notebook panel jupyter-notebook bioinformatics-pipeline transcript rnaseq read-counts illumina bedtools salmon rna-seq-analysis rsem gff ngs-analysis snpeff
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Dec 14, 2025 - R
Aggregation of QC metrics and outlier nomination for multi-sample studies
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Jun 17, 2025 - R
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