A QC pipeline for SVs calls based on coverage and SNP calls
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Aug 15, 2018 - R
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ngs-analysis
Here are 48 public repositories matching this topic...
Aggregation of QC metrics and outlier nomination for multi-sample studies
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Jun 17, 2025 - R
An assessment of the species diversity and disease potential of Pythium communities in Europe
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Sep 26, 2024 - R
Here is my participation to the 2024 edition of the HackBio Internship (AMR in cancer track).
cancer bioinformatics-pipeline amr bioinformatics-analysis ngs-analysis ngs-pipeline antimicrobial-resistance
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Oct 17, 2024 - R
Algorithm to implement Fraction and Allelic Copy number Estimate from Tumor/normal Sequencing using unmatched normal sample(s) for log ratio calculations
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Sep 15, 2023 - R
A repository for efficient population genomic analysis using Snakemake workflow.
ngs population population-genomics variant-calling genome-analysis rprogramming ngs-analysis whole snakemake-workflow
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Apr 21, 2025 - R
Source code to support the paper: “Extensive tissue-specific expression variation and novel regulators underlying circadian behavior”
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Jan 16, 2023 - R
This project was my Master's (Biotechnology) Thesis project where we aimed to develop a machine learning model that identifies Oral cancer candidate genes.
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Sep 28, 2025 - R
This tool is aimed at helping to analyze small to medium vcf files of genotyped individuals.
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Apr 24, 2023 - R
A reproducible RNA-Seq analysis pipeline for Staphylococcus aureus under antibiotic stress, utilizing Nextflow and Singularity. It involves genome mapping, read counting, and statistical analysis to identify differentially expressed genes (DEGs) and generates key visualizations.
shell bash cli r ubuntu nextflow hpc deseq2 google-cloud-platform samtools featurecounts bowtie ngs-analysis cutadapt ngs-pipeline fastqc sratoolkit apptainer
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Dec 9, 2024 - R
Code and scripts used for Worth et al. 2022: "Receptor editing constrains development of phosphatidyl choline-specific B cells in VH12-transgenic mice".
r ngs immunology rep-seq ngs-analysis vdj-recombination ngs-pipeline b-cell immcantation transgene b-cell-receptor mus-musculus
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May 24, 2022 - R
a shiny frontend for the nextflow-bcl pipeline
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Nov 10, 2020 - R
main Repository for my Master's Thesis work
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May 21, 2023 - R
Bulk-RNA seq workflow
bioinformatics biology computational-biology bioinformatics-pipeline biological-data-analysis ngs-analysis ngs-pipeline bulkrnaseq
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Dec 12, 2025 - R
Source code to support the paper: "Extensive mitochondrial population structure and haplotype-specific variation in metabolic phenotypes in the Drosophila Genetic Reference Panel"
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Sep 9, 2022 - R
Bioinformatic pipeline for SARS-CoV-2 sequence analysis
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Oct 20, 2021 - R
The KlebGen project is a genomics surveillance initiative focused on Klebsiella Pneumoniae and E. Coli strains isolated from neonates across Africa. This repository contains all the scripts used to analyze the strains from the Cameroonian subset of the project.
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Oct 21, 2025 - R
Analysis of Single-Cell RNA data from SRR14294834 in peripheral blood mononuclear cells in severe asthma
bioinformatics ngs-analysis k-means-clustering single-cell-analysis single-cell-rna-sequencing-analysis
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Jan 29, 2025 - R
Repository containing various RNA-seq, ChIP-seq, and 16S-seq analysis pipelines run through R
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Jul 6, 2021 - R
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