SRSF shape analysis framework for sequencing data

Collection of Scripts used for Population Genetic Study of RNAi Genes Duplications in Drosophila

A QC pipeline for SVs calls based on coverage and SNP calls

scripts

Multple methods for BSA Pipeline

Hunting for CMV and HHV-6 in cfDNA sequence

a shiny frontend for the nextflow-bcl pipeline

Useful R-scripts by edert

Repository containing various RNA-seq, ChIP-seq, and 16S-seq analysis pipelines run through R

R package for Sequence Search in BAM files using R Bioconductor

Bioinformatic pipeline for SARS-CoV-2 sequence analysis

An R package to integrate and analyze CNV calling results from multiple methods in a uniformed and standardized manner

RNA-seq analysis workflow using DESeq2

Algorithm to implement Fraction and Allelic Copy number Estimate from Tumor/normal Sequencing using unmatched normal sample(s) for log ratio calculations

ChIP-seq

Code and scripts used for Worth et al. 2022: "Receptor editing constrains development of phosphatidyl choline-specific B cells in VH12-transgenic mice".

Ensemble Learning for Harmonization and Annotation of Single Cells (ELeFHAnt) provides an easy to use R package for users to annotate clusters of single cells, harmonize labels across single cell datasets to generate a unified atlas and infer relationship among celltypes between two datasets. It uses an ensemble of three machine learning classif…

Source code to support the paper: "Extensive mitochondrial population structure and haplotype-specific variation in metabolic phenotypes in the Drosophila Genetic Reference Panel"

RNA-seq analysis

A comprehensive R package to construct interactive and reproducible biological data analysis applications based on the R platform