Making some comparisons of NGS data

NGSハンズオン講習会2016年 NGS解析基礎、RNA-seq、Reseq、ChIP-seq資料

WIP & POC: Count Viral and other non-human genome signatures in Human NGS data

Example files for Benin NGS capacity building project

SRSF shape analysis framework for sequencing data

SRSF framework for nucleosome positioning analysis

Fast and accurate single sample SNV caller

Coverage graph creator from BAM files (included in the SSV-Conta package)

Extract unmapped read fragments from a sequence alignment map by evaluating it's concise idiosyncratic gapped alignment reports (CIGARs)

Collection of Scripts used for Population Genetic Study of RNAi Genes Duplications in Drosophila

A QC pipeline for SVs calls based on coverage and SNP calls

FastC aims to provide a simple way to do some quality control checks on treated sequence data. It is similar to FastQC allowing a comparative study between raw and processed data.

scripts

duplex DNA molecule identification tool for ultra-sensitive SNV detection

Mobile Element Insertion Breakpoint Analyzer (MEIBA)

Identification of single nucleotide variants using position-specific error estimation in deep sequencing data

Snakemake pipeline to merge gnomAD VCF files