🐳 Galaxy Docker repository for NGS Analysis

Data science project, analysing NGS data from a binding study,

Diagnostic performance of HPV-DeepSeek, a hybrid capture whole genome sequencing liquid biopsy for HPV-associated cancers

Leveraging WES short reads for PAN-EXOME creation and analysis.

miscellaneous stand-alone basic utilities for genomics and genomics-adjacent operations (share with lab mates)

Pipeline para montagem direcionada (gene-a-gene) a partir de leituras pareadas.

This repository covers research paper implementations in the field of Genomics, Next Generation Sequencing, Bioinformatics and Machine Learning.

An assessment of the species diversity and disease potential of Pythium communities in Europe

Here is my participation to the 2024 edition of the HackBio Internship (AMR in cancer track).

A genetic sequence analysis on calculating the GC contents and CpG deficiencies on multiple coronaviruses (SAR-CoV, SAR-CoV-2, MERS-CoV and 2 two bat derived SARS-like coronaviruses) to see which coronavirus has the most potentially effective mechanism to escape the anti-virus activities on human bodies.

Developed a Bash-based pipeline for bacterial NGS data analysis, including QC, trimming, alignment, variant calling, and annotation (FastQC, Trimmomatic, BWA, Samtools, bcftools, SnpEff).

A portfolio of Nupur Upadhyay, a BS-MS student at IISER Thiruvananthapuram, Kerala, India.

Personal blog on computational biology and pathology

SRSF shape analysis framework for sequencing data

This tool is aimed at helping to analyze small to medium vcf files of genotyped individuals.

2024 DIGI+ Talent跨域數位人才加速躍升計畫

SRSF framework for nucleosome positioning analysis

Predicting true low-VAF SNVs in HPV using triplicate NGS samples and machine learning

This is Loan Robinson Github Page, which includes all tutorials for education purpose.

A tool for deep statistical analyses and informative visualizations of complex -omic data