🐳 Galaxy Docker repository for NGS Analysis

A genetic sequence analysis on calculating the GC contents and CpG deficiencies on multiple coronaviruses (SAR-CoV, SAR-CoV-2, MERS-CoV and 2 two bat derived SARS-like coronaviruses) to see which coronavirus has the most potentially effective mechanism to escape the anti-virus activities on human bodies.

This is Loan Robinson Github Page, which includes all tutorials for education purpose.

A tool for deep statistical analyses and informative visualizations of complex -omic data

Research projects conducted at the GeneMAP Research Center

Example files for Benin NGS capacity building project

Análisis genómicos y transcriptómicos con plataforma NGS

Making some comparisons of NGS data

A Hugo-based deployment of biocomputeobject.org

Quality control and processing of NGS data

🧐Handbook for NGS data analysis

This project focuses on identifying somatic variants in whole-genome sequencing (WGS) data from tongue cancer samples and cell lines. The workflow leverages industry-standard tools for alignment, quality control, and variant calling, specifically targeting chromosomes 6 and 7 of the human genome.

Galaxy YEP Qc & Viz workflow invocation scripts and input datasets

Teaching material used in the "Advanced Bioinformatics for Next-Generation Sequencing" class, University of Copenhagen, 2021

Whole-Genome-Sequencing analysis pipeline of Ascochyta rabiei isolates

Fast-polyvalent trimmer used for several applications of next-generation sequencing

workflow and notes on large virus genome assembly and snp call using FastQC, Trimmomatic, bowtie2, and samtools.

Webserver for storage [and analysis] of NGS-based HIVDR testing data

In this training course you will find theory and practice material for introducing yourself to wgs analysis for bacterial, including outbreak investigation.