WisecondorX — An evolved WISECONDOR

is an open-source LIMS (laboratory Information Management System) for Next Generation Sequencing sample management, statistics and reports, and bioinformatics analysis service management.

Genomic interval operations on Pandas DataFrames

SalmonTE is an ultra-Fast and Scalable Quantification Pipeline of Transpose Element (TE) Abundances

Metagenomic pipeline and other general scripts used in the lab.

HemTools: a collection of NGS pipelines and bioinformatic analyses

Publication quality NGS track plotting

Computational Suite for Bioinformaticians and Biologists (CSBB) is a RShiny application developed with an intention to empower researchers from wet and dry lab to perform downstream Bioinformatics analysis

This RNAseq data analysis tutorial is created for educational purpose

A comprehensive R package to construct interactive and reproducible biological data analysis applications based on the R platform

SIB course that introduces analysis of NGS data

生物信息学项目实践仓库🏆🥇

A set of CWL tools and workflows used by NCBI Computational Biology Branch for NGS data analysis

Using combined evidence from replicates to evaluate ChIP-seq peaks

Project Manager for NGS data analysis

PlasmidID is a mapping-based, assembly-assisted plasmid identification tool that analyzes and gives graphic solution for plasmid identification.

GitHub for the SIB courses NGS - Genome variant analysis

Collection of bioinformatics analysis code and replication records for academic papers

Workshop • Intro to Bioinformatics using NGS data • 5 days

R package: Simulate Expression data from igraph network using mvtnorm (CRAN; JOSS)