RNA-seq pipeline in R/Bash enables QC, alignment, read counting, and differential expression using Bioconductor; reproducible workflow on Ubuntu with Conda. 🐙

ViroConstrictor is a pipeline designed to process raw FastQ data from viral amplicon-based sequencing and generate biologically correct consensus sequences of the given viral genome

Bulk-RNA seq workflow

Genetic Medicine of African Populations

RNA-seq pipeline for raw sequence alignment and transcript/gene quantification.

Using combined evidence from replicates to evaluate ChIP-seq peaks

Professional MCP server for FastQC and MultiQC quality control analysis with advanced visualization and report parsing

Materials for ACE course on Genetic Linkage Analysis.

Genomic interval operations on Pandas DataFrames

Repository for population genetics and quantitative genetics metrics implementarion and visualization

A flexible, automation and pragmatic workflow tool to process the NGS data.

Workshop • Intro to Bioinformatics using NGS data • 5 days

WisecondorX — An evolved WISECONDOR

SIB course that introduces analysis of NGS data

is an open-source LIMS (laboratory Information Management System) for Next Generation Sequencing sample management, statistics and reports, and bioinformatics analysis service management.

A tool in order to accurately remove primer sequences from NGS reads in an amplicon experiment

Bioinformatics analysis pipeline for metagenomic profiling, functional annotation, and machine learning on T2D patient data.

Refactored and improved version of [aakechin/BRCA-analyzer](https://github.com/aakechin/BRCA-analyzer) workflow