ViroConstrictor is a pipeline designed to process raw FastQ data from viral amplicon-based sequencing and generate biologically correct consensus sequences of the given viral genome

RNA-seq pipeline for raw sequence alignment and transcript/gene quantification.

Professional MCP server for FastQC and MultiQC quality control analysis with advanced visualization and report parsing

Genomic interval operations on Pandas DataFrames

WisecondorX — An evolved WISECONDOR

is an open-source LIMS (laboratory Information Management System) for Next Generation Sequencing sample management, statistics and reports, and bioinformatics analysis service management.

A tool in order to accurately remove primer sequences from NGS reads in an amplicon experiment

Refactored and improved version of [aakechin/BRCA-analyzer](https://github.com/aakechin/BRCA-analyzer) workflow

HemTools: a collection of NGS pipelines and bioinformatic analyses

TrueConsense is a consensus caller for viral-targets that create biologically correct consensus sequences. TrueConsense keeps track of open reading frames, compensates for common sequencing or alignment artefacts, and is able to generate consensus sequences on multiple coverage-thresholds at the same time

Clinical Prediction tool with inbuild machine learning model

AminoExtract is a tool for translating and extracting amino acid sequences from nucleotide-sequences based on a GFF input

A user-friendly pipeline for viral diversity analysis and characterization.

Publication quality NGS track plotting

Project Manager for NGS data analysis

miscellaneous stand-alone basic utilities for genomics and genomics-adjacent operations (share with lab mates)

Flexible analysis of high-content CRISPR screening

Pipeline para montagem direcionada (gene-a-gene) a partir de leituras pareadas.

a toolset designed for the processing and analysis of eCLIP/iCLIP dataset

Circrnas in Host And viRuses anaLysis pIpEline for Detection Annotation Quantification of circRNAs