Lists (28)
Advancing Julia
Repos that advance Julia as a compelling scientific programming language.AI-Assisted Engineering
Programming will never be the same.Bioinformatics
"Bioinformatics is terrible. Everybody knows bioinformatics is terrible...it’s not a good situation that we’re in."Biology in the Frontend
Interactive simulations, visualizations, and demos served in the browser.Command-line Utilities
Future-facing command-line tools written in innovative languages or that raise the bar in some other way.Data Visualization
Know your data by seeing it.Design as Code
Functional Programming
Writing composable, refactorable, and robust code with an FP paradigmGenomic epidemiology🦠🧬
Get started in Bioinformatics
Looking for inspiration to get started with making sense of noisy biological data? These repos punch above their weight.GIS
Spatial statistics, cartography, and other spatially explicit methodsGleam is cool
Glimpses of Jai
Early looks at the Jai programming language, which remains in closed betaGo in Bioinformatics
Tools built in Go that can be interfaced with in the command line, or in Go source code.i use neovim, btw
we don't talk about vscode in this householdLearning Me a Haskell
Finally giving in and learning Haskell—I may never be the sameMetagenomics is hard :(
but fun?Python as a Glue Language
Python is beautiful...but slow. These tools help bring out its best side: as an elegant glue language connecting faster pieces of software.R in Science
"The best thing about R is it was designed by statisticians. The worst thing about R is it was designed by statisticians."Rust does all the things
Tools built in Rust that can be interfaced with in the command line, or in Rust source code.Scientific Reproducibility
Tools that make doing reproducible science—a very difficult task!—easier.Simulation & Testing
Software for Biodiversity
Software developed to help understand and solve the biodiversity crisis and advance our understanding of ecology and evolution in general.Standards for Excellent Programs
TUIs
I love TUIs and I don't care who knows itTurns out your app is a database
Repos that are explicitly--or accidentally--database projects.TypeScript Eats the World
We all give into TypeScript eventually...Workflow Orchestration
Tools for deploying many steps of dataflow across a variety of infrastructuresStars
Prettier is an opinionated code formatter.
🖤 Create and share beautiful images of your source code
High performance Node.js image processing, the fastest module to resize JPEG, PNG, WebP, AVIF and TIFF images. Uses the libvips library.
node.js command-line interfaces made easy
Concise, consistent, and legible badges in SVG and raster format
a project to visualize global weather conditions
Business intelligence as code: build fast, interactive data visualizations in SQL and markdown
🎈 Simple reactive notebooks for Julia
sqlite3 in ur indexeddb (hopefully a better backend soon)
The markdown editor that's just a textarea https://overtype.dev
The most secure, collision-resistant ids optimized for horizontal scaling and performance.
Graphviz DOT rendering and animated transitions using D3
Query processing and transformation of array-backed data tables.
Embeddable genomic visualization component based on the Integrative Genomics Viewer
A standard library with the same API in F#, Rescript and OCaml
Web app for visualizing pathogen evolution
An adapter for enabling Rayon-based concurrency on the Web with WebAssembly.
Data visualization and analysis framework focused on phenotype-molecular data integration at cohort level.
The Whole Genome Sequencing Coverage Plot (wgscovplot) is a tool to generate HTML Interactive Coverage Plot given coverage depth information, variants and DNA Gene features
mytax is a tool for building custom taxonomies, useful for nucleotide sequence classification
Scaffold web projects using Vite, Gleam and TypeScript