Lists (29)
Advancing Julia
Repos that advance Julia as a compelling scientific programming language.AI-Assisted Engineering
Programming will never be the same.Bioinformatics
"Bioinformatics is terrible. Everybody knows bioinformatics is terrible...it’s not a good situation that we’re in."Biology in the Frontend
Interactive simulations, visualizations, and demos served in the browser.Command-line Utilities
Future-facing command-line tools written in innovative languages or that raise the bar in some other way.Data Visualization
Know your data by seeing it.Design as Code
Functional Programming
Writing composable, refactorable, and robust code with an FP paradigmGenomic epidemiology🦠🧬
Get started in Bioinformatics
Looking for inspiration to get started with making sense of noisy biological data? These repos punch above their weight.GIS
Spatial statistics, cartography, and other spatially explicit methodsGleam is cool
Glimpses of Jai
Early looks at the Jai programming language, which remains in closed betaGo in Bioinformatics
Tools built in Go that can be interfaced with in the command line, or in Go source code.i use neovim, btw
we don't talk about vscode in this householdLearning Me a Haskell
Finally giving in and learning Haskell—I may never be the sameMetagenomics is hard :(
but fun?Python as a Glue Language
Python is beautiful...but slow. These tools help bring out its best side: as an elegant glue language connecting faster pieces of software.R in Science
"The best thing about R is it was designed by statisticians. The worst thing about R is it was designed by statisticians."Reading
Open-source books and docs distributed on GitHubRust in Bioinformatics (and Beyond!)
Tools built in Rust that can be interfaced with in the command line, or in Rust source code.Scientific Reproducibility
Tools that make doing reproducible science—a very difficult task!—easier.Simulation & Testing
Software for Biodiversity
Software developed to help understand and solve the biodiversity crisis and advance our understanding of ecology and evolution in general.Standards for Excellent Programs
TUIs
I love TUIs and I don't care who knows itTurns out your app is a database
Repos that are explicitly--or accidentally--database projects.TypeScript Eats the World
We all give into TypeScript eventually...Workflow Orchestration
Tools for deploying many steps of dataflow across a variety of infrastructuresStars
Learn how to design large-scale systems. Prep for the system design interview. Includes Anki flashcards.
Python tool for converting files and office documents to Markdown.
A curated list of awesome Machine Learning frameworks, libraries and software.
Composable transformations of Python+NumPy programs: differentiate, vectorize, JIT to GPU/TPU, and more
Intelligent automation and multi-agent orchestration for Claude Code
⚡ A Fast, Extensible Progress Bar for Python and CLI
A cross-platform command-line utility that creates projects from cookiecutters (project templates), e.g. Python package projects, C projects.
Turn (almost) any Python command line program into a full GUI application with one line
A reactive notebook for Python — run reproducible experiments, query with SQL, execute as a script, deploy as an app, and version with git. Stored as pure Python. All in a modern, AI-native editor.
Typer, build great CLIs. Easy to code. Based on Python type hints.
An extremely fast Python type checker and language server, written in Rust.
A set of ready to use Agent Skills for research, science, engineering, analysis, finance and writing.
A high-performance, zero-overhead, extensible Python compiler with built-in NumPy support
Resume builder for academics and engineers
🚀 Level up your GitHub profile readme with customizable cards including LOC statistics!
PyGWalker: Turn your dataframe into an interactive UI for visual analysis
An orchestration platform for the development, production, and observation of data assets.
Gel supercharges Postgres with a modern data model, graph queries, Auth & AI solutions, and much more.
The pytest framework makes it easy to write small tests, yet scales to support complex functional testing
Access large language models from the command-line
A modular SQL linter and auto-formatter with support for multiple dialects and templated code.