Lists (26)
Advancing Julia
Repos that advance Julia as a compelling scientific programming language.Another opportunity to bring up Rust
Tools built in Rust that can be interfaced with in the command line, or in Rust source code.Bioinformatics software...but good
"Bioinformatics is terrible. Everybody knows bioinformatics is terrible...it’s not a good sitaution that we’re in."Biology in the Frontend
Interactive simulations, visualizations, and demos served in the browser.Command-line Utilities
Future-facing command-line tools written in innovative languages or that raise the bar in some other way.Data Visualization
Know your data by seeing it.Design as Code
Functional Programming
Writing composable, refactorable, and robust code with an FP paradigmGenomic epidemiology🦠🧬
Get started in Bioinformatics
Looking for inspiration to get started with making sense of noisy biological data? These repos punch above their weight.GIS
Spatial statistics, cartography, and other spatially explicit methodsGleam is cool
Glimpses of Jai
Early looks at the Jai programming language, which remains in closed betaGo in Bioinformatics
Tools built in Go that can be interfaced with in the command line, or in Go source code.Learning Me a Haskell
Finally giving in and learning Haskell—I may never be the sameMetagenomics is hard :(
but fun?Python as a Glue Language
Python is beautiful...but slow. These tools help bring out its best side: as an elegant glue language connecting faster pieces of software.R in Science
"The best thing about R is it was designed by statisticians. The worst thing about R is it was designed by statisticians."Scientific Reproducibility
Tools that make doing reproducible science—a very difficult task!—easier.Simulations
A list that celebrates simulations' central role in biology and scientific computing writ large.Software for Biodiversity
Software developed to help understand and solve the biodiversity crisis and advance our understanding of ecology and evolution in general.Standards for Excellent Programs
TUIs
I love TUIs and I don't care who knows itTurns out your app is a database
Repos that are explicitly--or accidentally--database projects.TypeScript Eats the World
We all give into TypeScript eventually...Workflow Orchestration
Tools for deploying many steps of dataflow across a variety of infrastructuresStars
magic-trace collects and displays high-resolution traces of what a process is doing
Programming language for literate programming law specification
Owl - OCaml Scientific Computing @ https://ocaml.xyz
🍬 a functional language for building type-safe, scalable, and maintainable applications
Concurrent Programming with Effect Handlers
Effects-based direct-style IO for multicore OCaml
Examples to illustrate the use of algebraic effects in Multicore OCaml
Declarative definition of command line interfaces for OCaml
📜 CCL: Categorical Configuration Language, The most elegant configuration language
Jane Street Capital's asynchronous execution library
A library to help writing wrappers around ocaml code for python
An experimental JavaScript runtime built with OxCaml and JavaScriptCore
TOML parsing, manipulation, and pretty-printing library for OCaml (fully 1.0.0-compliant)
Modern, type-safe, contract-first web framework for OCaml 5
Simple and type-safe dataframe api implemented in pure ocaml
Type-safe Tailwind CSS in OCaml - A lightweight utility-first CSS generation library with prose typography support, responsive modifiers, and minimal bundle size for js_of_ocaml.