Lists (24)
Advancing Julia
Repos that advance Julia as a compelling scientific programming language.Biology in the Frontend
Interactive simulations, visualizations, and demos served in the browser.Command-line Utilities
Future-facing command-line tools written in innovative languages or that raise the bar in some other way.Data Visualization
Know your data by seeing it.Database Innovation
Database innovations for a new era of realtime, distributed data engineering, with a focus on bioinformatics applications.Design as Code
Functional Programming
Writing composable, refactorable, and robust code with an FP paradigmGenomic epidemiology🦠🧬
Get started in Bioinformatics
Looking for inspiration to get started with making sense of noisy biological data? These repos punch above their weight.GIS
Spatial statistics, cartography, and other spatially explicit methodsGleam is cool
Glimpses of Jai
Early looks at the Jai programming language, which remains in closed betaGo in Bioinformatics
Tools built in Go that can be interfaced with in the command line, or in Go source code.Learning Me a Haskell
Finally giving in and learning Haskell—I may never be the sameMetagenomics is hard :(
but fun?Python as a Glue Language
Python is beautiful...but slow. These tools help bring out its best side: as an elegant glue language connecting faster pieces of software.R in Science
"The best thing about R is it was designed by statisticians. The worst thing about R is it was designed by statisticians."Rust in Bioinformatics (and Beyond)
Tools built in Rust that can be interfaced with in the command line, or in Rust source code.Scientific Reproducibility
Tools that make doing reproducible science—a very difficult task!—easier.Simulations
A list that celebrates simulations' central role in biology and scientific computing writ large.Software for Biodiversity
Software developed to help understand and solve the biodiversity crisis and advance our understanding of ecology and evolution in general.Standards for Excellent Programs
TypeScript Eats the World
We all give into TypeScript eventually...Workflow Orchestration
Tools for deploying many steps of dataflow across a variety of infrastructuresStars
Friends don't let friends make certain types of data visualization - What are they and why are they bad.
R Package for 2D and 3D mapping and data visualization
Comprehensive list of color palettes available in R ❤️🧡💛💚💙💜
An R-focused pipeline toolkit for reproducibility and high-performance computing
Function-oriented Make-like declarative workflows for R
Assertive programming for R analysis pipelines
Visualize and annotate genomic coverage with ggplot2
An R package to enable reproducible data processing, packaging and sharing.
Estimate Realtime Case Counts and Time-varying Epidemiological Parameters
🌶 An R package for genetic analysis of populations with mixed (clonal/sexual) reproduction
biodiversity genomics course by Nicol Rueda, Karin Näsvall, Fernando Seixas and Joana Meier from the Wellcome Sanger Institute