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Starred repositories

9 stars written in Makefile
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Graphical Fragment Assembly (GFA) Format Specification

Makefile 222 45 Updated Aug 21, 2024

ONT assembly and Illumina polishing pipeline

Makefile 87 17 Updated Dec 8, 2020

Filtering and profiling of next-generational sequencing data using region-specific rules

Makefile 79 8 Updated Oct 30, 2023

Human reference genome analysis sets

Makefile 65 4 Updated Jun 17, 2023

🪡Correct and scaffold assemblies using long reads

Makefile 62 8 Updated Apr 1, 2026

Collection of commonly used RDP Tools for easy building

Makefile 53 52 Updated Jun 8, 2023

⛰ covtobed | Convert the coverage track from a BAM file into a BED file

Makefile 44 3 Updated Nov 6, 2025

Compare assembly graph file formats

Makefile 16 1 Updated Jul 23, 2015

Managing sequencing data with RDF

Makefile 13 Updated Sep 15, 2023