A collection of Galaxy-related training material

Bioconductor cheat sheet

A course on genomics and bioinformatics from WU

Cross-platform normalization enables machine learning model training on microarray and RNA-seq data simultaneously

Pipelines in genomics

Script and pipeline for BRAINcode project

Workshop • Intro to Bioinformatics using NGS data • 5 days

BrainSeq Phase II project lead by LIBD for the BrainSeq Consortium

An example RNA-seq pipeline with Nextflow and using public ENCODE data

RNAseq Data Analysis Course, Cambridge University Bioinformatics Training Facility, March 2019

Code and analyses for the recount-brain project

SPEAQeasy: portable LIBD RNA-seq pipeline using Nextflow. Check http://research.libd.org/SPEAQeasy-example/ for an example on how to use this pipeline and analyze the resulting output files.

Template R code for bioinformatics analysis pipeline of transcriptomic Illumina datasets

CHARGE Consortium: collaboration for mapping targets from 1000G GWAS on coronary artery calcification (CAC) with Maryam Kavousi, Maxime Bos, Clint L. Miller, and Pat Peyser.

ExpoSeq is a pipeline to process and analyze in various visualizations ngs data from phage display campaigns

Isocomp provides tools to compare any number of transcriptome assemblies (GTF + fasta) from long read RNAseq

A shiny app for custom analyzes of preprocessed omics data

Behavioral and Transcriptomic Analyses of mecp2 Function in Zebrafish